Coordination Committee consist of the Chairman and the Vice Chairman are the daily organizers. In accordance to their experience, they have the capacity regarding to the local development through tourism and conservatory of geological heritage. The main assignment for the Coordination Committee is to run the Geopark action plans based on deliberation and mutual agreement between the stakeholders. In running the assignment, the Coordination Committee shall be assisted by Experts coming from various background and disciplines that hold positions in local government including representatives from the local community.

Besides having expertise in governmental field, maritime and fisheries, agriculture, forestry, and geology, these experts must have broad regional insights and outlook. The experts are responsible in strengthen the development of the Geopark by providing insights and assessment.

The Raja Ampat Geopark has a secretariat that is responsible to coordinate the spread of information regarding the management and the operation of the Geopark . Programs and action plans of the Geopark is managed by a Technical Commission consists of the Commission of Development, Commission of Promotion, Commission of Conservation, Commission of Community Empowerment, and the Commission of Investment and Cooperation. The integrated Technical Committee are representatives from related agencies and business.